Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015944421.1_cds_XP_016487235.1_77992
CDS Infomation

[gene=LOC107807393] [db_xref=GeneID:107807393] [protein=protein DEFECTIVE IN EXINE FORMATION 1-like isoform X2] [protein_id=XP_016487235.1] [location=join(16045..16186,19406..19971,20098..20168,20788..21044,21519..21700,21777..22060,22178..22295,22396..22578,22678..22995)] [gbkey=CDS]
Sequence

ATGTCTGATAAACTTGAGATTCCTCGGTTGAAGGTTAAAAAAAATTGGCATGTGGGTTTG
AGTTCAGACCCTGTGGACCGTTCTCATCCAGATGTCCATGATGACCAACTAATCCAGGAG
CATCTGATGGAGTCTGTAGCCCGTCATGATGCGTCCACTCACAGTAGCAACCATTCAGAC
TCTACTACATCAGCAATTCACAATGAGACGCATTCGGTTCTGAATGAAGTCCATCATGAT
GCATCCAACGGTTCAATATCTTTGCCATCAGAAGTTTCATATAACAATTCGTCTACTTTA
GAGGACCAAAAGAGGACAAACAGTAGTCTAGGTGATGCAGAAACAAACATGGCTAACTCG
AACAATAGTATTCTGAGTTCTGAAAATGAGAAAATTAGCAATTTGGAGAATGGAACCAGT
ACCGGAAGAAGACTTCTTGAAGATGATGTCTCGAAAAGATCTGAGGGAAGTGCTTCTGGG
TCAAAAGATGTTGGAGCTGCGACTGTGGAAAATGAAGAAGGCCTAGAAGCAGATGCTGAT
TCATCTTTTGAGTTATTTCGTGACAGTGATGAGCTGGCAGATGAGTATAATTATGACTAT
GATGATTATGTTGATGAGGACACGTGGAAAGACGAAGAATTTCGGGAGCCAGAACATGAG
AAATTGGAGGATTATGTGCATATTGATGCTCATGTTTTATGTACACCTGTCATAGCGGAC
ATTGATAATGATGGGGTGTCAGAAATGATTATTGCAGTTTCTTATTTCTTTGACCATGAG
TACTATAAAAATTCAGAGCATTCAAAGGAGCTTGGAGACATTGACATTGGAAAATATGTA
TCTGGTGGTATTGTTGTTTTTAATCTAGATACCAAGCAAGTCAAGTGGACTCAACAACTG
GACCTAAGTACTGACACAGGGAACTTCCGTGCCTACATATATTCTTCCCCTACGGTAGTT
GATCTGGATGGTGATGGAAATTTGGACATTCTAGTTGGAACCTCTTATGGCTTGTTTTAT
GTCTTGGATCACAAGGGGAAGGTGAGGGATAAGTTTCCGCTTGAAATGGCTGAAATCCAA
GGAGCAGTAATTGCAGCTGATATAAATGATGATGGCAAGATTGAACTAGTTACTACAGAT
TCGCATGGCAATATTGCTGCATGGACTGCACAGGGCAAAGAAATTTGGGAAAAGCATCTT
AAAAGCCTTGTTCCACAGGGACCTGTCGTTGGTGATGTGGATGGGGATGGCCATACCGAT
ATCGTTGTTCCAACACTTTCTGGGAATATTTATGTTCTTAGTGGCAAGGATGGCTCGTTT
GTACACCCATATCCTTACAGGACTCATGGTAGAGTGATGAATCAAGTTCTTCTTGTTGAC
TTGACCAAACGTGGACAGAGGAAAAAAGGGCTTACAATTATCACAACTTCATTTGATGGT
TACTTATATCTCATAGATGGACCTACGTCATGTGCTGATGTTGTAGATATTGGTGAAACA
TCATACAGCATGGTCTTGGCTGACAATGTTGATGGTGGTGACGACCTCGATCTTATTGTG
ACAACCATGAATGGCAATGTCTTCTGTTTTTCGACGCCTTCTCCCCATCATCCCCTCAAG
GCATGGAGATCACCTAACCAAGGGAGAAATAATGCTGCATACAGATTAGATCGTGAGGGA
GTCTATGTAACTCCATCATCAAGAGCTTTCCGTGATGAAGAAGGCAAGAGCTTTTGGGTT
GAAATAGAAATTTTTGATAGATACAGATATCCATCTGGGTCTCAAGCTCCATATAATGTC
ACGGTGAGTTTGTTAGTACCTGGCAATTACCAAGGTGATAGAACTATTAAGCAAAATAAA
ATATTTGGTCAACCTGGAAAACATCGGGTTATGCTCCCAACTGTTGCTGTGAGGACTGCT
GGAACTGTGTTGGTGGAGATGGTTGACAAGAATGGGCTATATTTCTCTGATGATTTTTCC
TTGACATTCCATTTTCATTACTATAAGCTGTTAAAATGGCTTCTCGTTCTTCCTATGCTG
GGGATGTTTGGTGTGCTTGTCATTCTTCGTCCACAGGAGGCCATGCCATTACCATCATTT
TCGCGAAACACTAACTTGTAA

Peptide Sequence

PEP ID

XP_016487235.1
PEP Infomation

PREDICTED: protein DEFECTIVE IN EXINE FORMATION 1-like isoform X2 [Nicotiana tabacum]
Sequence

MSDKLEIPRLKVKKNWHVGLSSDPVDRSHPDVHDDQLIQEHLMESVARHDASTHSSNHSD
STTSAIHNETHSVLNEVHHDASNGSISLPSEVSYNNSSTLEDQKRTNSSLGDAETNMANS
NNSILSSENEKISNLENGTSTGRRLLEDDVSKRSEGSASGSKDVGAATVENEEGLEADAD
SSFELFRDSDELADEYNYDYDDYVDEDTWKDEEFREPEHEKLEDYVHIDAHVLCTPVIAD
IDNDGVSEMIIAVSYFFDHEYYKNSEHSKELGDIDIGKYVSGGIVVFNLDTKQVKWTQQL
DLSTDTGNFRAYIYSSPTVVDLDGDGNLDILVGTSYGLFYVLDHKGKVRDKFPLEMAEIQ
GAVIAADINDDGKIELVTTDSHGNIAAWTAQGKEIWEKHLKSLVPQGPVVGDVDGDGHTD
IVVPTLSGNIYVLSGKDGSFVHPYPYRTHGRVMNQVLLVDLTKRGQRKKGLTIITTSFDG
YLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLK
AWRSPNQGRNNAAYRLDREGVYVTPSSRAFRDEEGKSFWVEIEIFDRYRYPSGSQAPYNV
TVSLLVPGNYQGDRTIKQNKIFGQPGKHRVMLPTVAVRTAGTVLVEMVDKNGLYFSDDFS
LTFHFHYYKLLKWLLVLPMLGMFGVLVILRPQEAMPLPSFSRNTNL

Transcript Sequence

Gene sequence data has not been registered.